1.国家自然科学基金项目（31872650），东亚偏蒴藓属的系统分类学研究，主持人

2.国家自然科学基金项目（31470309），东亚提灯藓科系统和分类修订及其与北美间断分布相似种关系探讨，主持人

3.国家自然科学基金项目（31170191），提灯藓科DNA条码序列筛选及系统发育分析， 主持人

4.国家自然科学基金项目（31070186），中国扁萼苔科疑难种的分子鉴定，主持人

5.国家自然科学基金项目（30870159），中国扁萼苔科的分类学修订，主持人

6.国家自然科学基金项目（30170556），植物高抗旱基因的克隆、转化及其抗旱性分析，第二位

7.山东省自然科学基金项目（ZR2011CM010），波叶仙鹤藓铜离子转运蛋白基因的克隆及其表达分析，主持人

8.山东省自然科学基金项目（Y2005D08），苔藓植物对山东省重金属污染的监测作用，主持人

9.山东省自然科学基金项目（2000D02），药用苔藓植物资源调查及抗菌性研究，主持人

1.Wei Mingxing, Yu Chunyan, Ge Bingkun, Zhang HX*, Wang AK*, Yi Yanjun*. (2022), The phenylcoumaran benzylic ether reductase gene PtPCBER improves the salt tolerance of transgenic poplar through lignan-mediated reactive oxygen species scavenging. Environmental and Experimental Botany, 201: 104946.

2.Yue Liu; Bingkun Ge; Daqing Zhang; Yanjun Yi*. (2022)，De novo transcriptome assembly and analysis of genes involved in desiccation tolerance in Grimmia pilifera. Gene , 847(2022): 146841

3.Yan-Jun Yi; Jie Zhang; Xiao-Xuan Xiao; Si He. (2021), Delongia flavolimbata (S.He & Y.J.Yi) S.He & Y.J.Yi, an unusual species with elamellate laminae from China, newly combined in Polytrichaceae based on molecular data. Journal Of Bryology, 43(4): 313-320

4.Yi, Yan-Jun; Xiao, Xiao-Xuan; Wu, Lin; He, Si. (2020), Molecular data affirming a new occurrence of Encalypta streptocarpa (Encalyptaceae, Bryophyta) in Central China. Herzogia, 33(2): 309-318

5.Yi, Yan-Jun; Xiao, Xiao-Xuan; Xu, Xiao-Xia; He, Si. (2020), Revisit of European-Asiatic connections in Tayloria rudolphiana (Splachnaceae, Bryophyta) based on molecular data and new morphological evidence . Phytotaxa, 438(4): 247-255

6.Yi, Yan-Jun; Xiao, Xiao-Xuan; Li, Yan; He, Si. (2020), Orthomnion elimbatum (Mniaceae, Bryophyta), a Malesian and Australian species new to China and Vietnam based on molecular data . Phytotaxa, 451(3): 206-214

7.Yi Yanjun*, Sun Zhenwei, He Si* & Sulayman Mamtimin. (2018)，A study of molecular sequences, sexuality, and morphological variation in Plagiomnium carolinianum, P. maximoviczii, and P. rhynchophorum (Bryophyta, Mniaceae). Phytotaxa 375 (1) :081-091

8.Yi YanJun & He Si. (2015)，Atrichum laoshanense Y.-J. Yi &S.He,a new species of Polytrichaceae from eastern China. Journal of Bryology, 37(4)292-296

9.Yi YanJun & He Si & Ma. (2015)，WenZhang. Hyophila flavolimbata, a new species of Pottiaceae from northwestern Yunnan, China. Phytotaxa, 231 (2):182-186

10.Yi YanJun & He Si. (2014)，Plagiomnium guizhouense Y.-J.Yi & S.He sp.nov. (Mniaceae) found in southwestern China. Journal of Bryology, 36(4):291-294

11.Yi YanJun & He Si. (2014)，Orthomnion javense (Mniaceae), a formerly Malesian species newly confirmed for China and new to Laos, with O. loheri as a new synonym. Phytotaxa, 170 (1):41-45